Volume 3; Issue 7 Suppleme

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BMC Proceedings
Volume 3; Issue 7 Suppleme

BMC Proceedings

Volume 3; Issue 7 Suppleme

1

The effect of multiple genetic variants in predicting the risk of type 2 diabetes

Lu, Qing, Song, Yeunjoo, Wang, Xuefeng, Won, Sungho, Cui, Yuehua, Elston, Robert C

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 367 KB

english, 2009

2

Evaluating epistatic interaction signals in complex traits using quantitative traits

Mukherjee, Odity, Sanapala, Krishna, Anbazhagana, Padmanabhan, Ghosh, Saurabh

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 358 KB

english, 2009

3

Conditional analysis of the major histocompatibility complex in rheumatoid arthritis

Taylor, Kimberly E, Criswell, Lindsey A

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 1.09 MB

english, 2009

4

Application of seventeen two-locus models in genome-wide association studies by two-stage strategy

Niu, Adan, Zhang, Zhaogong, Sha, Qiuying

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 532 KB

english, 2009

5

Simultaneous genome-wide association studies of anti-cyclic citrullinated peptide in rheumatoid arthritis using penalized orthogonal-components regression

Lin, Yanzhu, Zhang, Min, Wang, Libo, Pungpapong, Vitara, Fleet, James C, Zhang, Dabao

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 207 KB

english, 2009

6

Genetic Analysis Workshop 16: Strategies for genome-wide association study analyses

Cupples, L Adrienne, Beyene, Joseph, Bickeböller, Heike, Daw, E Warwick, Fallin, M Daniele, Gauderman, W James, Ghosh, Saurabh, Goode, Ellen L, Hauser, Elizabeth R, Hinrichs, Anthony, Kent, Jack W, Ma

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 201 KB

english, 2009

7

Family-based genome-wide association study for simulated data of Framingham Heart Study

Xu, Hongyan, Mathew, George, George, Varghese

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 301 KB

english, 2009

8

Case-control genome-wide association study of rheumatoid arthritis from Genetic Analysis Workshop 16 using penalized orthogonal-components regression-linear discriminant analysis

Zhang, Min, Lin, Yanzhu, Wang, Libo, Pungpapong, Vitara, Fleet, James C, Zhang, Dabao

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 243 KB

english, 2009

9

Armitage's trend test for genome-wide association analysis: one-sided or two-sided?

Fang, Yixin, Wang, Yuanjia, Sha, Nanshi

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 200 KB

english, 2009

10

A combinatorial approach for detecting gene-gene interaction using multiple traits of Genetic Analysis Workshop 16 rheumatoid arthritis data

Cui, Xiaoqi, Sha, Qiuying, Zhang, Shuanglin, Chen, Huann-Sheng

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 274 KB

english, 2009

11

Genome-wide association study of rheumatoid arthritis by a score test based on wavelet transformation

Jiang, Renfang, Dong, Jianping, Dai, Yilin

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 391 KB

english, 2009

12

Application of sex-specific single-nucleotide polymorphism filters in genome-wide association data

Ling, Hua, Hetrick, Kurt, Bailey-Wilson, Joan E, Pugh, Elizabeth W

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 432 KB

english, 2009

13

Simultaneous analysis of all single-nucleotide polymorphisms in genome-wide association study of rheumatoid arthritis

Mathew, George, Xu, Hongyan, George, Varghese

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 192 KB

english, 2009

14

Genome-wide association analysis of rheumatoid arthritis data via haplotype sharing

Allen, Andrew S, Satten, Glen A

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 306 KB

english, 2009

15

Multivariate association analysis of the components of metabolic syndrome from the Framingham Heart Study

Baker, Allison R, Goodloe, Robert J, Larkin, Emma K, Baechle, Dan J, Song, Yeunjoo E, Phillips, Lynette S, Gray-McGuire, Courtney L

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 223 KB

english, 2009

16

Genome-wide association analysis of Framingham Heart Study data for the Genetics Analysis Workshop 16: effects due to medication use

Rice, Treva K, Sung, Yun, Shi, Gang, Gu, C Charles, Rao, DC

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 273 KB

english, 2009

17

Detecting susceptibility genes for rheumatoid arthritis based on a novel sliding-window approach

Sha, Qiuying, Tang, Rui, Zhang, Shuanglin

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 218 KB

english, 2009

18

Analysis of genome-wide association data by large-scale Bayesian logistic regression

Wang, Yuanjia, Sha, Nanshi, Fang, Yixin

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 786 KB

english, 2009

19

Comparison of a unified analysis approach for family and unrelated samples with the transmission-disequilibrium test to study associations of hypertension in the Framingham Heart Study

Sun, Xiangqing, Feng, Tao, Song, Yeunjoo, Elston, Robert C, Zhu, Xiaofeng

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 357 KB

english, 2009

20

Power of selective genotyping in genome-wide association studies of quantitative traits

Xing, Chao, Xing, Guan

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 772 KB

english, 2009

21

Comparison between single-marker analysis using Merlin and multi-marker analysis using LASSO for Framingham simulated data

Sung, Yun, Rice, Treva K, Shi, Gang, Gu, C Charles, Rao, DC

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 268 KB

english, 2009

22

Incorporating multiple-marker information to detect risk loci for rheumatoid arthritis

Wang, Xuexia, Qin, Huaizhen, Sha, Qiuying

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 181 KB

english, 2009

23

Comparison between the stochastic search variable selection and the least absolute shrinkage and selection operator for genome-wide association studies of rheumatoid arthritis

Srivastava, Sudeep, Chen, Liang

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 427 KB

english, 2009

24

Genome-wide association study for empirically derived metabolic phenotypes in the Framingham Heart Study offspring cohort

Wilcox, Marsha, Li, Qingqin, Sun, Yu, Stang, Paul, Berlin, Jesse, Wang, Dai

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 564 KB

english, 2009

25

Data for Genetic Analysis Workshop 16 Problem 1, association analysis of rheumatoid arthritis data

Amos, Christopher I, Chen, Wei, Seldin, Michael F, Remmers, Elaine F, Taylor, Kimberly E, Criswell, Lindsey A, Lee, Annette T, Plenge, Robert M, Kastner, Daniel L, Gregersen, Peter K

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 201 KB

english, 2009

26

Associating multiple longitudinal traits with high-dimensional single-nucleotide polymorphism data: application to the Framingham Heart Study

Waaijenborg, Sandra, Zwinderman, Aeilko H

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 332 KB

english, 2009

27

Representation of genetic association via attributable familial relative risks in order to identify polymorphisms functionally relevant to rheumatoid arthritis

Bermejo, Justo, Fischer, Christine, Schulz, Anke, Cremer, Nadine, Hein, Rebecca, Beckmann, Lars, Chang-Claude, Jenny, Hemminki, Kari

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 269 KB

english, 2009

28

Two-stage joint selection method to identify candidate markers from genome-wide association studies

Wu, Zheyang, Aporntewan, Chatchawit, Ballard, David H, Lee, Ji, Lee, Joon, Zhao, Hongyu

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 456 KB

english, 2009

29

Transmission-ratio distortion in the Framingham Heart Study

Paterson, Andrew D, Waggott, Daryl, Schillert, Arne, Infante-Rivard, Claire, Bull, Shelley B, Yoo, Yun, Pinnaduwage, Dushanthi

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 231 KB

english, 2009

30

Adjusting for HLA-DRβ1 in a genome-wide association analysis of rheumatoid arthritis and related biomarkers

Matthews, Abigail G, Li, Jia, He, Chunsheng, Ott, Jurg, Andrade, Mariza de

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 289 KB

english, 2009

31

A quantile-based method for association mapping of quantitative phenotypes: an application to rheumatoid arthritis phenotypes

Ghosh, Saurabh, Sanapala, Krishna, Ghosh, Abhik, Chakladar, Sujatro

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 171 KB

english, 2009

32

Genome-wide discovery of maternal effect variants

Kent, Jack W, Peterson, Charles P, Dyer, Thomas D, Almasy, Laura, Blangero, John

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 232 KB

english, 2009

33

Application of imputation methods to the analysis of rheumatoid arthritis data in genome-wide association studies

Childers, Douglas K, Kang, Guolian, Liu, Nianjun, Gao, Guimin, Zhang, Kui

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 199 KB

english, 2009

34

Elastic-net regularization approaches for genome-wide association studies of rheumatoid arthritis

Cho, Seoae, Kim, Haseong, Oh, Sohee, Kim, Kyunga, Park, Taesung

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 462 KB

english, 2009

35

Replication of recently identified associated single-nucleotide polymorphisms from six autoimmune diseases in Genetic Analysis Workshop 16 rheumatoid arthritis data

Deshmukh, Harshal, Kim-Howard, Xana, Nath, Swapan K

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 351 KB

english, 2009

36

Haplotype association analysis of North American Rheumatoid Arthritis Consortium data using a generalized linear model with regularization

Guo, Wei, Liang, Chin-yuan, Lin, Shili

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 344 KB

english, 2009

37

Genome-wide association studies using single-nucleotide polymorphisms versus haplotypes: an empirical comparison with data from the North American Rheumatoid Arthritis Consortium

Shim, Heejung, Chun, Hyonho, Engelman, Corinne D, Payseur, Bret A

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 270 KB

english, 2009

38

Non-redundant summary scores applied to the North American Rheumatoid Arthritis Consortium dataset

Pankratz, Nathan D

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 290 KB

english, 2009

39

The Genetic Analysis Workshop 16 Problem 3: simulation of heritable longitudinal cardiovascular phenotypes based on actual genome-wide single-nucleotide polymorphisms in the Framingham Heart Study

Kraja, Aldi T, Culverhouse, Robert, Daw, E Warwick, Wu, Jun, Van Brunt, Andrew, Province, Michael A, Borecki, Ingrid B

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 459 KB

english, 2009

40

Assessment of genotype imputation methods

Biernacka, Joanna M, Tang, Rui, Li, Jia, McDonnell, Shannon K, Rabe, Kari G, Sinnwell, Jason P, Rider, David N, de Andrade, Mariza, Goode, Ellen L, Fridley, Brooke L

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 293 KB

english, 2009

41

Defining genetic determinants of the Metabolic Syndrome in the Framingham Heart Study using association and structural equation modeling methods

Nock, Nora L, Wang, Xuefeng, Thompson, Cheryl L, Song, Yeunjoo, Baechle, Dan, Raska, Paola, Stein, Catherine M, Gray-McGuire, Courtney

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 1.27 MB

english, 2009

42

Memory management in genome-wide association studies

Chen, Xiang, Zhang, Meizhuo, Wang, Minghui, Zhu, Wensheng, Cho, Kelly, Zhang, Heping

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 190 KB

english, 2009

43

Evaluation of an optimal receiver operating characteristic procedure

Jeffries, Neal, Zheng, Gang

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 266 KB

english, 2009

44

A genome-wide association scan for rheumatoid arthritis data by Hotelling'sT2tests

Chen, Lianfu, Zhong, Ming, Chen, Wei, Amos, Christopher I, Fan, Ruzong

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 294 KB

english, 2009

45

Single versus multiple imputation for genotypic data

Fridley, Brooke L, McDonnell, Shannon K, Rabe, Kari G, Tang, Rui, Biernacka, Joanna M, Sinnwell, Jason P, Rider, David N, Goode, Ellen L

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 431 KB

english, 2009

46

Application of Bayesian classification with singular value decomposition method in genome-wide association studies

Kwon, Soonil, Cui, Jinrui, Rhodes, Shannon L, Tsiang, Donald, Rotter, Jerome I, Guo, Xiuqing

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 746 KB

english, 2009

47

Using a latent growth curve model for an integrative assessment of the effects of genetic and environmental factors on multiple phenotypes

Hamid, Jemila S, Roslin, Nicole M, Paterson, Andrew D, Beyene, Joseph

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 270 KB

english, 2009

48

Evaluation of genetic risk scores for lipid levels using genome-wide markers in the Framingham Heart Study

Piccolo, Stephen R, Abo, Ryan P, Allen-Brady, Kristina, Camp, Nicola J, Knight, Stacey, Anderson, Jeffrey L, Horne, Benjamin D

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 236 KB

english, 2009

49

On the association between rheumatoid arthritis and classical HLA class I and class II alleles predicted from single-nucleotide polymorphism data

Lemire, Mathieu

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 187 KB

english, 2009

50

Genome-wide analysis of haplotype interaction for the data from the North American Rheumatoid Arthritis Consortium

Park, Jungsun, Namkung, Junghyun, Jhun, Mina, Park, Taesung

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 322 KB

english, 2009

51

Mendelian randomization in family data

Morris, Nathan J, Gray-McGuire, Courtney, Stein, Catherine M

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 246 KB

english, 2009

52

Genetic association studies and the effect of misclassification and selection bias in putative confounders

Avery, Christy L, Monda, Keri L, North, Kari E

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 224 KB

english, 2009

53

Effect of population stratification on the identification of significant single-nucleotide polymorphisms in genome-wide association studies

Sarasua, Sara M, Collins, Julianne S, Williamson, Dhelia M, Satten, Glen A, Allen, Andrew S

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 417 KB

english, 2009

54

Genetics Analysis Workshop 16 Problem 2: the Framingham Heart Study data

Cupples, L Adrienne, Heard-Costa, Nancy, Lee, Monica, Atwood, Larry D

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 181 KB

english, 2009

55

The effect of minor allele frequency on the likelihood of obtaining false positives

Tabangin, Meredith E, Woo, Jessica G, Martin, Lisa J

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 201 KB

english, 2009

56

Inference of disease associations with unmeasured genetic variants by combining results from genome-wide association studies with linkage disequilibrium patterns in a reference data set

Hadley, David, Strachan, David P

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 680 KB

english, 2009

57

A search for non-chromosome 6 susceptibility loci contributing to rheumatoid arthritis

Suarez, Brian K, Culverhouse, Robert, Jin, Carol H, Hinrichs, Anthony L

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 281 KB

english, 2009

58

Genome-wide association studies of rheumatoid arthritis data via multiple hypothesis testing methods for correlated tests

Kang, Guolian, Childers, Douglas K, Liu, Nianjun, Zhang, Kui, Gao, Guimin

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 224 KB

english, 2009

59

Using a higher criticism statistic to detect modest effects in a genome-wide study of rheumatoid arthritis

Parkhomenko, Elena, Tritchler, David, Lemire, Mathieu, Hu, Pingzhao, Beyene, Joseph

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 227 KB

english, 2009

60

ACPA: automated cluster plot analysis of genotype data

Schillert, Arne, Schwarz, Daniel F, Vens, Maren, Szymczak, Silke, König, Inke R, Ziegler, Andreas

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 221 KB

english, 2009

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